PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551054.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 1154aa    MW: 129312 Da    PI: 9.3493
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551054.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.48.7e-104479340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W++eE e+++da +++G++ Wk++a+ +  +R+ +++
   XP_010551054.1 44 QWSKEELERFYDAYRKFGKE-WKKVAAFVR-TRSIEMV 79
                     6*******************.*********.**98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.08E-103990IPR009057Homeodomain-like
SMARTSM007173.2E-44189IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-44477IPR009057Homeodomain-like
PfamPF002493.1E-84479IPR001005SANT/Myb domain
CDDcd001671.55E-54587No hitNo description
SMARTSM011351.9E-56630731IPR033471DIRP domain
PfamPF065849.7E-31630730IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1154 aa     Download sequence    Send to blast
MAPSKKSKYK KASRVNVVSP NKDEENKSKT RQRKRKLSDM LGPQWSKEEL ERFYDAYRKF  60
GKEWKKVAAF VRTRSIEMVE ALYTMNKAYL SLPEGTASVV GLIAMMTDHY TVLHGGSDSE  120
QESNEGTNTP RKGQKLARVK SSDHLSKGLE GLSDRLQFRS SSGSLSLLKR RRTETVPRAV  180
GKRTPRIPVS FSREKDKRER YLSPVKRGLK LKGDAIDDDM EHEIALALAE ALQRGGSPQV  240
SRTPNRKEKM YSPYKKDEKM RAEIDMAIAK LHSSDMDEGG CELSLGSTEA DNGDFAGPRN  300
YLMHGEGSSA VEMLQKGKRY YMQKLDVDES PNNRTDDVKE ACSGTEEGQH LGPCKDKFEP  360
EGVVENSSKP TYKSSRRKSK KVLFTADEGA ACDALQTLAD LSLMMPDTAT DTESSIQVKE  420
ERAAKADESD LKGSGPAPRS KMGSLKFSKQ RKSTTDVLSN TEAERKSPSS IVMRKRRQKS  480
SPVKVPKDEA PSSSQFAESP NRKGIDEGKR PVGRGKRSTN IPNSHGKKSV KHHDHTSSSN  540
GIVEGNGTAL STAQTYKKQV NLPTKGRRRR KTPAEKLLTD EDGKSSEILV NGFSNTQIQS  600
LNDKSLNLKE KLSHYLSSYR SRRWCVFEWF YSAIDYPWFS RQEFVEYLDH VGLGHVPRFT  660
RVEWGVIRSS LGKPRRFSEQ FLKEEKEKLY LYRDSVRKYY VKLNAGVREG LPTDLARPLN  720
VGQRVIALHP RTREIHDGSV LTFDHSKYRV QFDHSDLGVE FVKDTECMPL NPLQNIPASL  780
AQQYVSLNHH IQNHSMLKMH EQEIENMPEG YLKLSCETLE NSRGPHLSPS NYNISNSLKQ  840
QKVDSSSTNS QAQVVMDEAI QSQFVNSQPS SFAQGQAKEA DAQALSELTR ALDKKELVLS  900
ALKCMNSEIE ESQKDGNKAL KDSEPFKKQY AAVLFQLSEI NEQVSSALLR LRQRNTYQAS  960
SSYMPFRCMN TSGDPDGHLT CLDNSVSESH DHGPHVSEIV ESSRTKARSM VNRAMEAMTS  1020
LKTEKNNVVN IEEAIDFVND NLSVDCAEAP VQRPQVAHDQ LLASGPNPAI DSRSNPLGRN  1080
DPQIPSELVS RCVATLLMIQ KCTERQFPPS EVAEVLDSAV ASLQPSCSQN FPIYAEIQKC  1140
MGIIRNQILA LVPT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1472477MRKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551055.10.0PREDICTED: protein ALWAYS EARLY 3 isoform X1
RefseqXP_010551054.10.0PREDICTED: protein ALWAYS EARLY 3 isoform X1
SwissprotQ6A3320.0ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLD7L0S70.0D7L0S7_ARALL; Always early protein 3
STRINGfgenesh2_kg.3__2365__AT3G21430.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM127142427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding